Gene : Medtr0305s0020 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR10024:SF243 - ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN Description:  C2 calcium/lipid-binding and GRAM domain protein
Genomic Order:  1 Name:  ? Medtr0305s0020
Secondary Identifier:  ? PAC:31100938
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0305s0020 0.5kb upstream 0.5kb upstream 4324 true scaffold0305: 12297-16620 Medicago truncatula
Medtr0305s0020 0.5kb upstream 0.5kb upstream 500 false scaffold0305: 16121-16620 Medicago truncatula
Medtr0305s0020 0.5kb downstream 0.5kb downstream 4324 true scaffold0305: 11797-16120 Medicago truncatula
Medtr0305s0020 0.5kb downstream 0.5kb downstream 500 false scaffold0305: 11797-12296 Medicago truncatula
Medtr0305s0020 1.0kb upstream 1.0kb upstream 4824 true scaffold0305: 12297-17120 Medicago truncatula
Medtr0305s0020 1.0kb upstream 1.0kb upstream 1000 false scaffold0305: 16121-17120 Medicago truncatula
Medtr0305s0020 1.0kb downstream 1.0kb downstream 4824 true scaffold0305: 11297-16120 Medicago truncatula
Medtr0305s0020 1.0kb downstream 1.0kb downstream 1000 false scaffold0305: 11297-12296 Medicago truncatula
Medtr0305s0020 2.0kb upstream 2.0kb upstream 5824 true scaffold0305: 12297-18120 Medicago truncatula
Medtr0305s0020 2.0kb upstream 2.0kb upstream 2000 false scaffold0305: 16121-18120 Medicago truncatula
Medtr0305s0020 2.0kb downstream 2.0kb downstream 5824 true scaffold0305: 10297-16120 Medicago truncatula
Medtr0305s0020 2.0kb downstream 2.0kb downstream 2000 false scaffold0305: 10297-12296 Medicago truncatula
Medtr0305s0020 5.0kb upstream 5.0kb upstream 8824 true scaffold0305: 12297-21120 Medicago truncatula
Medtr0305s0020 5.0kb upstream 5.0kb upstream 5000 false scaffold0305: 16121-21120 Medicago truncatula
Medtr0305s0020 5.0kb downstream 5.0kb downstream 8824 true scaffold0305: 7297-16120 Medicago truncatula
Medtr0305s0020 5.0kb downstream 5.0kb downstream 5000 false scaffold0305: 7297-12296 Medicago truncatula
Medtr0305s0020 10.0kb upstream 10.0kb upstream 9093 true scaffold0305: 12297-21389 Medicago truncatula
Medtr0305s0020 10.0kb upstream 10.0kb upstream 5269 false scaffold0305: 16121-21389 Medicago truncatula
Medtr0305s0020 10.0kb downstream 10.0kb downstream 13824 true scaffold0305: 2297-16120 Medicago truncatula
Medtr0305s0020 10.0kb downstream 10.0kb downstream 10000 false scaffold0305: 2297-12296 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309147 5265 Fabidae View MSA
124067885 5270 Rosid View MSA
123751578 5271 Pentapetalae View MSA
122793897 5272 Eudicot View MSA
122046174 5273 Angiosperm View MSA
121350979 5274 Embryophyte View MSA
123427289 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.142       High
cufflinks 0.151        
cufflinks 0.106        
cufflinks 0.147        
cufflinks 0.135        
cufflinks 0.096     Low  
cufflinks 0.326        
cufflinks 0.122        
cufflinks 0.647       High

0 Strain