Gene : Medtr0311s0030 M. truncatula Mt4.0v1
Defline:  (1 of 4) KOG2729 - ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation Description:  cornichon family protein
Genomic Order:  2 Name:  ? Medtr0311s0030
Secondary Identifier:  ? PAC:31076637
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0311s0030 0.5kb upstream 0.5kb upstream 6523 true scaffold0311: 9376-15898 Medicago truncatula
Medtr0311s0030 0.5kb upstream 0.5kb upstream 500 false scaffold0311: 9376-9875 Medicago truncatula
Medtr0311s0030 0.5kb downstream 0.5kb downstream 6523 true scaffold0311: 9876-16398 Medicago truncatula
Medtr0311s0030 0.5kb downstream 0.5kb downstream 500 false scaffold0311: 15899-16398 Medicago truncatula
Medtr0311s0030 1.0kb upstream 1.0kb upstream 7023 true scaffold0311: 8876-15898 Medicago truncatula
Medtr0311s0030 1.0kb upstream 1.0kb upstream 1000 false scaffold0311: 8876-9875 Medicago truncatula
Medtr0311s0030 1.0kb downstream 1.0kb downstream 7023 true scaffold0311: 9876-16898 Medicago truncatula
Medtr0311s0030 1.0kb downstream 1.0kb downstream 1000 false scaffold0311: 15899-16898 Medicago truncatula
Medtr0311s0030 2.0kb upstream 2.0kb upstream 8023 true scaffold0311: 7876-15898 Medicago truncatula
Medtr0311s0030 2.0kb upstream 2.0kb upstream 2000 false scaffold0311: 7876-9875 Medicago truncatula
Medtr0311s0030 2.0kb downstream 2.0kb downstream 8023 true scaffold0311: 9876-17898 Medicago truncatula
Medtr0311s0030 2.0kb downstream 2.0kb downstream 2000 false scaffold0311: 15899-17898 Medicago truncatula
Medtr0311s0030 5.0kb upstream 5.0kb upstream 11023 true scaffold0311: 4876-15898 Medicago truncatula
Medtr0311s0030 5.0kb upstream 5.0kb upstream 5000 false scaffold0311: 4876-9875 Medicago truncatula
Medtr0311s0030 5.0kb downstream 5.0kb downstream 10978 true scaffold0311: 9876-20853 Medicago truncatula
Medtr0311s0030 5.0kb downstream 5.0kb downstream 4955 false scaffold0311: 15899-20853 Medicago truncatula
Medtr0311s0030 10.0kb upstream 10.0kb upstream 15898 true scaffold0311: 1-15898 Medicago truncatula
Medtr0311s0030 10.0kb upstream 10.0kb upstream 9875 false scaffold0311: 1-9875 Medicago truncatula
Medtr0311s0030 10.0kb downstream 10.0kb downstream 10978 true scaffold0311: 9876-20853 Medicago truncatula
Medtr0311s0030 10.0kb downstream 10.0kb downstream 4955 false scaffold0311: 15899-20853 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311032 5265 Fabidae View MSA
124067439 5270 Rosid View MSA
123752732 5271 Pentapetalae View MSA
122796851 5272 Eudicot View MSA
122045878 5273 Angiosperm View MSA
121348735 5274 Embryophyte View MSA
123427918 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.464        
cufflinks 0.127       Low
cufflinks 0.178        
cufflinks 0.889       High
cufflinks 0.268        
cufflinks 0.835       High
cufflinks 0.323        
cufflinks 0.136       Low
cufflinks 0.352        

0 Strain