Gene : SapurV1A.1560s0050 S. purpurea v1.0
Defline:  (1 of 1) PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  5
Name:  ? SapurV1A.1560s0050 Secondary Identifier:  ? PAC:31449528
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
SapurV1A.1560s0050 0.5kb upstream 0.5kb upstream 7822 true Scaffold1560: 39479-47300 Salix purpurea
SapurV1A.1560s0050 0.5kb upstream 0.5kb upstream 500 false Scaffold1560: 39479-39978 Salix purpurea
SapurV1A.1560s0050 0.5kb downstream 0.5kb downstream 7822 true Scaffold1560: 39979-47800 Salix purpurea
SapurV1A.1560s0050 0.5kb downstream 0.5kb downstream 500 false Scaffold1560: 47301-47800 Salix purpurea
SapurV1A.1560s0050 1.0kb upstream 1.0kb upstream 8322 true Scaffold1560: 38979-47300 Salix purpurea
SapurV1A.1560s0050 1.0kb upstream 1.0kb upstream 1000 false Scaffold1560: 38979-39978 Salix purpurea
SapurV1A.1560s0050 1.0kb downstream 1.0kb downstream 8322 true Scaffold1560: 39979-48300 Salix purpurea
SapurV1A.1560s0050 1.0kb downstream 1.0kb downstream 1000 false Scaffold1560: 47301-48300 Salix purpurea
SapurV1A.1560s0050 2.0kb upstream 2.0kb upstream 9322 true Scaffold1560: 37979-47300 Salix purpurea
SapurV1A.1560s0050 2.0kb upstream 2.0kb upstream 2000 false Scaffold1560: 37979-39978 Salix purpurea
SapurV1A.1560s0050 2.0kb downstream 2.0kb downstream 9322 true Scaffold1560: 39979-49300 Salix purpurea
SapurV1A.1560s0050 2.0kb downstream 2.0kb downstream 2000 false Scaffold1560: 47301-49300 Salix purpurea
SapurV1A.1560s0050 5.0kb upstream 5.0kb upstream 12322 true Scaffold1560: 34979-47300 Salix purpurea
SapurV1A.1560s0050 5.0kb upstream 5.0kb upstream 5000 false Scaffold1560: 34979-39978 Salix purpurea
SapurV1A.1560s0050 5.0kb downstream 5.0kb downstream 12322 true Scaffold1560: 39979-52300 Salix purpurea
SapurV1A.1560s0050 5.0kb downstream 5.0kb downstream 5000 false Scaffold1560: 47301-52300 Salix purpurea
SapurV1A.1560s0050 10.0kb upstream 10.0kb upstream 17322 true Scaffold1560: 29979-47300 Salix purpurea
SapurV1A.1560s0050 10.0kb upstream 10.0kb upstream 10000 false Scaffold1560: 29979-39978 Salix purpurea
SapurV1A.1560s0050 10.0kb downstream 10.0kb downstream 17322 true Scaffold1560: 39979-57300 Salix purpurea
SapurV1A.1560s0050 10.0kb downstream 10.0kb downstream 10000 false Scaffold1560: 47301-57300 Salix purpurea

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041498 5273 Angiosperm View MSA
122463629 5262 Malpighiales View MSA
124249674 5268 Malvidae View MSA
124070961 5270 Rosid View MSA
123750498 5271 Pentapetalae View MSA
122788511 5272 Eudicot View MSA
121351189 5274 Embryophyte View MSA
123425600 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain