Gene : evm_27.TU.AmTr_v1.0_scaffold00001.393 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED Genomic Order:  387
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00001.393 Secondary Identifier:  ? PAC:31551210
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00001.393 0.5kb upstream 0.5kb upstream 19309 true AmTr_v1.0_scaffold00001: 8151199-8170507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00001: 8151199-8151698 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 0.5kb downstream 0.5kb downstream 19309 true AmTr_v1.0_scaffold00001: 8151699-8171007 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00001: 8170508-8171007 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 1.0kb upstream 1.0kb upstream 19809 true AmTr_v1.0_scaffold00001: 8150699-8170507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00001: 8150699-8151698 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 1.0kb downstream 1.0kb downstream 19809 true AmTr_v1.0_scaffold00001: 8151699-8171507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00001: 8170508-8171507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 2.0kb upstream 2.0kb upstream 20809 true AmTr_v1.0_scaffold00001: 8149699-8170507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00001: 8149699-8151698 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 2.0kb downstream 2.0kb downstream 20809 true AmTr_v1.0_scaffold00001: 8151699-8172507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00001: 8170508-8172507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 5.0kb upstream 5.0kb upstream 23809 true AmTr_v1.0_scaffold00001: 8146699-8170507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00001: 8146699-8151698 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 5.0kb downstream 5.0kb downstream 23809 true AmTr_v1.0_scaffold00001: 8151699-8175507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00001: 8170508-8175507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 10.0kb upstream 10.0kb upstream 28809 true AmTr_v1.0_scaffold00001: 8141699-8170507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00001: 8141699-8151698 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 10.0kb downstream 10.0kb downstream 28809 true AmTr_v1.0_scaffold00001: 8151699-8180507 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.393 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00001: 8170508-8180507 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain