Gene : evm_27.TU.AmTr_v1.0_scaffold00001.167 A. trichopoda v1.0
Defline:  (1 of 4) 2.5.1.29 - Geranylgeranyl diphosphate synthase / Geranylgeranyl-PP synthetase Genomic Order:  165
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00001.167 Secondary Identifier:  ? PAC:31551366
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-5120 Amborella trichopoda pathologic  
Atrichopoda PWY-5910 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00001.167 0.5kb upstream 0.5kb upstream 1610 true AmTr_v1.0_scaffold00001: 2896105-2897714 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00001: 2897215-2897714 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 0.5kb downstream 0.5kb downstream 1610 true AmTr_v1.0_scaffold00001: 2895605-2897214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00001: 2895605-2896104 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 1.0kb upstream 1.0kb upstream 2110 true AmTr_v1.0_scaffold00001: 2896105-2898214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00001: 2897215-2898214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 1.0kb downstream 1.0kb downstream 2110 true AmTr_v1.0_scaffold00001: 2895105-2897214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00001: 2895105-2896104 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 2.0kb upstream 2.0kb upstream 3110 true AmTr_v1.0_scaffold00001: 2896105-2899214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00001: 2897215-2899214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 2.0kb downstream 2.0kb downstream 3110 true AmTr_v1.0_scaffold00001: 2894105-2897214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00001: 2894105-2896104 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 5.0kb upstream 5.0kb upstream 6110 true AmTr_v1.0_scaffold00001: 2896105-2902214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00001: 2897215-2902214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 5.0kb downstream 5.0kb downstream 6110 true AmTr_v1.0_scaffold00001: 2891105-2897214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00001: 2891105-2896104 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 10.0kb upstream 10.0kb upstream 11110 true AmTr_v1.0_scaffold00001: 2896105-2907214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00001: 2897215-2907214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 10.0kb downstream 10.0kb downstream 11110 true AmTr_v1.0_scaffold00001: 2886105-2897214 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.167 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00001: 2886105-2896104 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain