Gene : evm_27.TU.AmTr_v1.0_scaffold00001.143 A. trichopoda v1.0
Defline:  (1 of 2) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  142
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00001.143 Secondary Identifier:  ? PAC:31551273
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda GLYOXYLATE-BYPASS Amborella trichopoda pathologic  
Atrichopoda PWY-5464 Amborella trichopoda pathologic  
Atrichopoda PWY-561 Amborella trichopoda pathologic  
Atrichopoda PWY-5690 Amborella trichopoda pathologic  
Atrichopoda PWY-6549 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00001.143 0.5kb upstream 0.5kb upstream 18791 true AmTr_v1.0_scaffold00001: 2377653-2396443 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00001: 2395944-2396443 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 0.5kb downstream 0.5kb downstream 18791 true AmTr_v1.0_scaffold00001: 2377153-2395943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00001: 2377153-2377652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 1.0kb upstream 1.0kb upstream 19291 true AmTr_v1.0_scaffold00001: 2377653-2396943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00001: 2395944-2396943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 1.0kb downstream 1.0kb downstream 19291 true AmTr_v1.0_scaffold00001: 2376653-2395943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00001: 2376653-2377652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 2.0kb upstream 2.0kb upstream 20291 true AmTr_v1.0_scaffold00001: 2377653-2397943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00001: 2395944-2397943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 2.0kb downstream 2.0kb downstream 20291 true AmTr_v1.0_scaffold00001: 2375653-2395943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00001: 2375653-2377652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 5.0kb upstream 5.0kb upstream 23291 true AmTr_v1.0_scaffold00001: 2377653-2400943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00001: 2395944-2400943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 5.0kb downstream 5.0kb downstream 23291 true AmTr_v1.0_scaffold00001: 2372653-2395943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00001: 2372653-2377652 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 10.0kb upstream 10.0kb upstream 28291 true AmTr_v1.0_scaffold00001: 2377653-2405943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00001: 2395944-2405943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 10.0kb downstream 10.0kb downstream 28291 true AmTr_v1.0_scaffold00001: 2367653-2395943 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.143 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00001: 2367653-2377652 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain