Gene : evm_27.TU.AmTr_v1.0_scaffold00001.548 A. trichopoda v1.0
Defline:  (1 of 2) PTHR23321//PTHR23321:SF33 - RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR Genomic Order:  538
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00001.548 Secondary Identifier:  ? PAC:31550998
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CALVIN-PWY Amborella trichopoda pathologic  
Atrichopoda PHOTOALL-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-5723 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00001.548 0.5kb upstream 0.5kb upstream 773 true AmTr_v1.0_scaffold00001: 13477650-13478422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00001: 13477650-13478149 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 0.5kb downstream 0.5kb downstream 773 true AmTr_v1.0_scaffold00001: 13478150-13478922 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00001: 13478423-13478922 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 1.0kb upstream 1.0kb upstream 1273 true AmTr_v1.0_scaffold00001: 13477150-13478422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00001: 13477150-13478149 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 1.0kb downstream 1.0kb downstream 1273 true AmTr_v1.0_scaffold00001: 13478150-13479422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00001: 13478423-13479422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 2.0kb upstream 2.0kb upstream 2273 true AmTr_v1.0_scaffold00001: 13476150-13478422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00001: 13476150-13478149 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 2.0kb downstream 2.0kb downstream 2273 true AmTr_v1.0_scaffold00001: 13478150-13480422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00001: 13478423-13480422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 5.0kb upstream 5.0kb upstream 5273 true AmTr_v1.0_scaffold00001: 13473150-13478422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00001: 13473150-13478149 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 5.0kb downstream 5.0kb downstream 5273 true AmTr_v1.0_scaffold00001: 13478150-13483422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00001: 13478423-13483422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 10.0kb upstream 10.0kb upstream 10273 true AmTr_v1.0_scaffold00001: 13468150-13478422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00001: 13468150-13478149 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 10.0kb downstream 10.0kb downstream 10273 true AmTr_v1.0_scaffold00001: 13478150-13488422 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.548 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00001: 13478423-13488422 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain