Gene : evm_27.TU.AmTr_v1.0_scaffold00003.180 A. trichopoda v1.0
Defline:  (1 of 2) PF13229 - Right handed beta helix region (Beta_helix) Genomic Order:  176
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00003.180 Secondary Identifier:  ? PAC:31565680
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-1081 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00003.180 0.5kb upstream 0.5kb upstream 2990 true AmTr_v1.0_scaffold00003: 3584427-3587416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00003: 3584427-3584926 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 0.5kb downstream 0.5kb downstream 2990 true AmTr_v1.0_scaffold00003: 3584927-3587916 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00003: 3587417-3587916 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 1.0kb upstream 1.0kb upstream 3490 true AmTr_v1.0_scaffold00003: 3583927-3587416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00003: 3583927-3584926 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 1.0kb downstream 1.0kb downstream 3490 true AmTr_v1.0_scaffold00003: 3584927-3588416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00003: 3587417-3588416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 2.0kb upstream 2.0kb upstream 4490 true AmTr_v1.0_scaffold00003: 3582927-3587416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00003: 3582927-3584926 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 2.0kb downstream 2.0kb downstream 4490 true AmTr_v1.0_scaffold00003: 3584927-3589416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00003: 3587417-3589416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 5.0kb upstream 5.0kb upstream 7490 true AmTr_v1.0_scaffold00003: 3579927-3587416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00003: 3579927-3584926 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 5.0kb downstream 5.0kb downstream 7490 true AmTr_v1.0_scaffold00003: 3584927-3592416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00003: 3587417-3592416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 10.0kb upstream 10.0kb upstream 12490 true AmTr_v1.0_scaffold00003: 3574927-3587416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00003: 3574927-3584926 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 10.0kb downstream 10.0kb downstream 12490 true AmTr_v1.0_scaffold00003: 3584927-3597416 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.180 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00003: 3587417-3597416 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain