Gene : evm_27.TU.AmTr_v1.0_scaffold00003.183 A. trichopoda v1.0
Defline:  (1 of 1) PTHR31375:SF13 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  179
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00003.183 Secondary Identifier:  ? PAC:31565612
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-1081 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00003.183 0.5kb upstream 0.5kb upstream 2858 true AmTr_v1.0_scaffold00003: 3640632-3643489 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00003: 3642990-3643489 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 0.5kb downstream 0.5kb downstream 2858 true AmTr_v1.0_scaffold00003: 3640132-3642989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00003: 3640132-3640631 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 1.0kb upstream 1.0kb upstream 3358 true AmTr_v1.0_scaffold00003: 3640632-3643989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00003: 3642990-3643989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 1.0kb downstream 1.0kb downstream 3358 true AmTr_v1.0_scaffold00003: 3639632-3642989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00003: 3639632-3640631 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 2.0kb upstream 2.0kb upstream 4358 true AmTr_v1.0_scaffold00003: 3640632-3644989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00003: 3642990-3644989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 2.0kb downstream 2.0kb downstream 4358 true AmTr_v1.0_scaffold00003: 3638632-3642989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00003: 3638632-3640631 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 5.0kb upstream 5.0kb upstream 7358 true AmTr_v1.0_scaffold00003: 3640632-3647989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00003: 3642990-3647989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 5.0kb downstream 5.0kb downstream 7358 true AmTr_v1.0_scaffold00003: 3635632-3642989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00003: 3635632-3640631 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 10.0kb upstream 10.0kb upstream 12358 true AmTr_v1.0_scaffold00003: 3640632-3652989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00003: 3642990-3652989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 10.0kb downstream 10.0kb downstream 12358 true AmTr_v1.0_scaffold00003: 3630632-3642989 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.183 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00003: 3630632-3640631 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain