Gene : evm_27.TU.AmTr_v1.0_scaffold00002.85 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11404:SF24 - SUPEROXIDE DISMUTASE [FE] 2, CHLOROPLASTIC Genomic Order:  85
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00002.85 Secondary Identifier:  ? PAC:31562650
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda DETOX1-PWY Amborella trichopoda pathologic  
Atrichopoda DETOX1-PWY-1 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00002.85 0.5kb upstream 0.5kb upstream 4368 true AmTr_v1.0_scaffold00002: 1738861-1743228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00002: 1738861-1739360 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 0.5kb downstream 0.5kb downstream 4368 true AmTr_v1.0_scaffold00002: 1739361-1743728 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00002: 1743229-1743728 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 1.0kb upstream 1.0kb upstream 4868 true AmTr_v1.0_scaffold00002: 1738361-1743228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00002: 1738361-1739360 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 1.0kb downstream 1.0kb downstream 4868 true AmTr_v1.0_scaffold00002: 1739361-1744228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00002: 1743229-1744228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 2.0kb upstream 2.0kb upstream 5868 true AmTr_v1.0_scaffold00002: 1737361-1743228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00002: 1737361-1739360 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 2.0kb downstream 2.0kb downstream 5868 true AmTr_v1.0_scaffold00002: 1739361-1745228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00002: 1743229-1745228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 5.0kb upstream 5.0kb upstream 8868 true AmTr_v1.0_scaffold00002: 1734361-1743228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00002: 1734361-1739360 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 5.0kb downstream 5.0kb downstream 8868 true AmTr_v1.0_scaffold00002: 1739361-1748228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00002: 1743229-1748228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 10.0kb upstream 10.0kb upstream 13868 true AmTr_v1.0_scaffold00002: 1729361-1743228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00002: 1729361-1739360 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 10.0kb downstream 10.0kb downstream 13868 true AmTr_v1.0_scaffold00002: 1739361-1753228 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.85 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00002: 1743229-1753228 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain