Gene : evm_27.TU.AmTr_v1.0_scaffold00002.603 A. trichopoda v1.0
Defline:  (1 of 3) PTHR33428:SF1 - CHLOROPHYLLASE-2, CHLOROPLASTIC Genomic Order:  597
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00002.603 Secondary Identifier:  ? PAC:31562448
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-6927 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00002.603 0.5kb upstream 0.5kb upstream 2977 true AmTr_v1.0_scaffold00002: 10531366-10534342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00002: 10531366-10531865 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 0.5kb downstream 0.5kb downstream 2977 true AmTr_v1.0_scaffold00002: 10531866-10534842 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00002: 10534343-10534842 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 1.0kb upstream 1.0kb upstream 3477 true AmTr_v1.0_scaffold00002: 10530866-10534342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00002: 10530866-10531865 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 1.0kb downstream 1.0kb downstream 3477 true AmTr_v1.0_scaffold00002: 10531866-10535342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00002: 10534343-10535342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 2.0kb upstream 2.0kb upstream 4477 true AmTr_v1.0_scaffold00002: 10529866-10534342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00002: 10529866-10531865 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 2.0kb downstream 2.0kb downstream 4477 true AmTr_v1.0_scaffold00002: 10531866-10536342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00002: 10534343-10536342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 5.0kb upstream 5.0kb upstream 7477 true AmTr_v1.0_scaffold00002: 10526866-10534342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00002: 10526866-10531865 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 5.0kb downstream 5.0kb downstream 7477 true AmTr_v1.0_scaffold00002: 10531866-10539342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00002: 10534343-10539342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 10.0kb upstream 10.0kb upstream 12477 true AmTr_v1.0_scaffold00002: 10521866-10534342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00002: 10521866-10531865 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 10.0kb downstream 10.0kb downstream 12477 true AmTr_v1.0_scaffold00002: 10531866-10544342 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.603 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00002: 10534343-10544342 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043389 5273 Angiosperm View MSA
121344751 5274 Embryophyte View MSA
123428003 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain