Gene : evm_27.TU.AmTr_v1.0_scaffold00002.396 A. trichopoda v1.0
Defline:  (1 of 7) PTHR11254 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Genomic Order:  393
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00002.396 Secondary Identifier:  ? PAC:31562526
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-7511 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00002.396 0.5kb upstream 0.5kb upstream 16110 true AmTr_v1.0_scaffold00002: 6974408-6990517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00002: 6974408-6974907 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 0.5kb downstream 0.5kb downstream 16110 true AmTr_v1.0_scaffold00002: 6974908-6991017 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00002: 6990518-6991017 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 1.0kb upstream 1.0kb upstream 16610 true AmTr_v1.0_scaffold00002: 6973908-6990517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00002: 6973908-6974907 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 1.0kb downstream 1.0kb downstream 16610 true AmTr_v1.0_scaffold00002: 6974908-6991517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00002: 6990518-6991517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 2.0kb upstream 2.0kb upstream 17610 true AmTr_v1.0_scaffold00002: 6972908-6990517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00002: 6972908-6974907 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 2.0kb downstream 2.0kb downstream 17610 true AmTr_v1.0_scaffold00002: 6974908-6992517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00002: 6990518-6992517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 5.0kb upstream 5.0kb upstream 20610 true AmTr_v1.0_scaffold00002: 6969908-6990517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00002: 6969908-6974907 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 5.0kb downstream 5.0kb downstream 20610 true AmTr_v1.0_scaffold00002: 6974908-6995517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00002: 6990518-6995517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 10.0kb upstream 10.0kb upstream 25610 true AmTr_v1.0_scaffold00002: 6964908-6990517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00002: 6964908-6974907 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 10.0kb downstream 10.0kb downstream 25610 true AmTr_v1.0_scaffold00002: 6974908-7000517 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00002.396 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00002: 6990518-7000517 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047566 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121351552 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain