Gene : evm_27.TU.AmTr_v1.0_scaffold00004.31 A. trichopoda v1.0
Defline:  (1 of 1) KOG3143 - Imidazoleglycerol-phosphate dehydratase Genomic Order:  31
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00004.31 Secondary Identifier:  ? PAC:31550373
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda HISTSYN-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00004.31 0.5kb upstream 0.5kb upstream 5073 true AmTr_v1.0_scaffold00004: 434554-439626 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00004: 439127-439626 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 0.5kb downstream 0.5kb downstream 5073 true AmTr_v1.0_scaffold00004: 434054-439126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00004: 434054-434553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 1.0kb upstream 1.0kb upstream 5573 true AmTr_v1.0_scaffold00004: 434554-440126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00004: 439127-440126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 1.0kb downstream 1.0kb downstream 5573 true AmTr_v1.0_scaffold00004: 433554-439126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00004: 433554-434553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 2.0kb upstream 2.0kb upstream 6573 true AmTr_v1.0_scaffold00004: 434554-441126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00004: 439127-441126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 2.0kb downstream 2.0kb downstream 6573 true AmTr_v1.0_scaffold00004: 432554-439126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00004: 432554-434553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 5.0kb upstream 5.0kb upstream 9573 true AmTr_v1.0_scaffold00004: 434554-444126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00004: 439127-444126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 5.0kb downstream 5.0kb downstream 9573 true AmTr_v1.0_scaffold00004: 429554-439126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00004: 429554-434553 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 10.0kb upstream 10.0kb upstream 14573 true AmTr_v1.0_scaffold00004: 434554-449126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00004: 439127-449126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 10.0kb downstream 10.0kb downstream 14573 true AmTr_v1.0_scaffold00004: 424554-439126 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00004.31 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00004: 424554-434553 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122045110 5273 Angiosperm View MSA
121344413 5274 Embryophyte View MSA
123423926 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain