Gene : evm_27.TU.AmTr_v1.0_scaffold00003.348 A. trichopoda v1.0
Defline:  (1 of 2) 2.8.1.8 - Lipoyl synthase / Lipoate synthase Genomic Order:  342
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00003.348 Secondary Identifier:  ? PAC:31565773
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY0-501 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00003.348 0.5kb upstream 0.5kb upstream 13534 true AmTr_v1.0_scaffold00003: 7853753-7867286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00003: 7853753-7854252 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 0.5kb downstream 0.5kb downstream 13534 true AmTr_v1.0_scaffold00003: 7854253-7867786 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00003: 7867287-7867786 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 1.0kb upstream 1.0kb upstream 14034 true AmTr_v1.0_scaffold00003: 7853253-7867286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00003: 7853253-7854252 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 1.0kb downstream 1.0kb downstream 14034 true AmTr_v1.0_scaffold00003: 7854253-7868286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00003: 7867287-7868286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 2.0kb upstream 2.0kb upstream 15034 true AmTr_v1.0_scaffold00003: 7852253-7867286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00003: 7852253-7854252 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 2.0kb downstream 2.0kb downstream 15034 true AmTr_v1.0_scaffold00003: 7854253-7869286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00003: 7867287-7869286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 5.0kb upstream 5.0kb upstream 18034 true AmTr_v1.0_scaffold00003: 7849253-7867286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00003: 7849253-7854252 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 5.0kb downstream 5.0kb downstream 18034 true AmTr_v1.0_scaffold00003: 7854253-7872286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00003: 7867287-7872286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 10.0kb upstream 10.0kb upstream 23034 true AmTr_v1.0_scaffold00003: 7844253-7867286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00003: 7844253-7854252 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 10.0kb downstream 10.0kb downstream 23034 true AmTr_v1.0_scaffold00003: 7854253-7877286 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00003.348 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00003: 7867287-7877286 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122045804 5273 Angiosperm View MSA
121345971 5274 Embryophyte View MSA
123424868 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain