Gene : evm_27.TU.AmTr_v1.0_scaffold00006.271 A. trichopoda v1.0
Defline:  (1 of 1) PTHR10314:SF21 - TRYPTOPHAN SYNTHASE BETA CHAIN Genomic Order:  268
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00006.271 Secondary Identifier:  ? PAC:31560371
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-6949 Amborella trichopoda pathologic  
Atrichopoda TRPSYN-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00006.271 0.5kb upstream 0.5kb upstream 8092 true AmTr_v1.0_scaffold00006: 8441893-8449984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00006: 8441893-8442392 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 0.5kb downstream 0.5kb downstream 8092 true AmTr_v1.0_scaffold00006: 8442393-8450484 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00006: 8449985-8450484 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 1.0kb upstream 1.0kb upstream 8592 true AmTr_v1.0_scaffold00006: 8441393-8449984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00006: 8441393-8442392 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 1.0kb downstream 1.0kb downstream 8592 true AmTr_v1.0_scaffold00006: 8442393-8450984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00006: 8449985-8450984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 2.0kb upstream 2.0kb upstream 9592 true AmTr_v1.0_scaffold00006: 8440393-8449984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00006: 8440393-8442392 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 2.0kb downstream 2.0kb downstream 9592 true AmTr_v1.0_scaffold00006: 8442393-8451984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00006: 8449985-8451984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 5.0kb upstream 5.0kb upstream 12592 true AmTr_v1.0_scaffold00006: 8437393-8449984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00006: 8437393-8442392 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 5.0kb downstream 5.0kb downstream 12592 true AmTr_v1.0_scaffold00006: 8442393-8454984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00006: 8449985-8454984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 10.0kb upstream 10.0kb upstream 17592 true AmTr_v1.0_scaffold00006: 8432393-8449984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00006: 8432393-8442392 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 10.0kb downstream 10.0kb downstream 17592 true AmTr_v1.0_scaffold00006: 8442393-8459984 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.271 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00006: 8449985-8459984 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043348 5273 Angiosperm View MSA
121348084 5274 Embryophyte View MSA
123380724 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain