Gene : evm_27.TU.AmTr_v1.0_scaffold00006.138 A. trichopoda v1.0
Defline:  (1 of 4) PTHR21725 - PUSHOVER/RETINOBLASTOMA-ASSOCIATED FACTOR 600 Genomic Order:  136
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00006.138 Secondary Identifier:  ? PAC:31560448
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-7511 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00006.138 0.5kb upstream 0.5kb upstream 25632 true AmTr_v1.0_scaffold00006: 6158342-6183973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00006: 6158342-6158841 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 0.5kb downstream 0.5kb downstream 25632 true AmTr_v1.0_scaffold00006: 6158842-6184473 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00006: 6183974-6184473 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 1.0kb upstream 1.0kb upstream 26132 true AmTr_v1.0_scaffold00006: 6157842-6183973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00006: 6157842-6158841 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 1.0kb downstream 1.0kb downstream 26132 true AmTr_v1.0_scaffold00006: 6158842-6184973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00006: 6183974-6184973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 2.0kb upstream 2.0kb upstream 27132 true AmTr_v1.0_scaffold00006: 6156842-6183973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00006: 6156842-6158841 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 2.0kb downstream 2.0kb downstream 27132 true AmTr_v1.0_scaffold00006: 6158842-6185973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00006: 6183974-6185973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 5.0kb upstream 5.0kb upstream 30132 true AmTr_v1.0_scaffold00006: 6153842-6183973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00006: 6153842-6158841 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 5.0kb downstream 5.0kb downstream 30132 true AmTr_v1.0_scaffold00006: 6158842-6188973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00006: 6183974-6188973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 10.0kb upstream 10.0kb upstream 35132 true AmTr_v1.0_scaffold00006: 6148842-6183973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00006: 6148842-6158841 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 10.0kb downstream 10.0kb downstream 35132 true AmTr_v1.0_scaffold00006: 6158842-6193973 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00006.138 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00006: 6183974-6193973 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042481 5273 Angiosperm View MSA
121347237 5274 Embryophyte View MSA
123425333 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain