Gene : evm_27.TU.AmTr_v1.0_scaffold00007.117 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11048:SF18 - CHLOROPHYLL SYNTHASE, CHLOROPLASTIC Genomic Order:  116
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00007.117 Secondary Identifier:  ? PAC:31557886
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-5064 Amborella trichopoda pathologic  
Atrichopoda PWY-5068 Amborella trichopoda pathologic  
Atrichopoda PWY-5086 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00007.117 0.5kb upstream 0.5kb upstream 14004 true AmTr_v1.0_scaffold00007: 2376196-2390199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00007: 2376196-2376695 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 0.5kb downstream 0.5kb downstream 14004 true AmTr_v1.0_scaffold00007: 2376696-2390699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00007: 2390200-2390699 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 1.0kb upstream 1.0kb upstream 14504 true AmTr_v1.0_scaffold00007: 2375696-2390199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00007: 2375696-2376695 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 1.0kb downstream 1.0kb downstream 14504 true AmTr_v1.0_scaffold00007: 2376696-2391199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00007: 2390200-2391199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 2.0kb upstream 2.0kb upstream 15504 true AmTr_v1.0_scaffold00007: 2374696-2390199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00007: 2374696-2376695 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 2.0kb downstream 2.0kb downstream 15504 true AmTr_v1.0_scaffold00007: 2376696-2392199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00007: 2390200-2392199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 5.0kb upstream 5.0kb upstream 18504 true AmTr_v1.0_scaffold00007: 2371696-2390199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00007: 2371696-2376695 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 5.0kb downstream 5.0kb downstream 18504 true AmTr_v1.0_scaffold00007: 2376696-2395199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00007: 2390200-2395199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 10.0kb upstream 10.0kb upstream 23504 true AmTr_v1.0_scaffold00007: 2366696-2390199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00007: 2366696-2376695 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 10.0kb downstream 10.0kb downstream 23504 true AmTr_v1.0_scaffold00007: 2376696-2400199 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00007.117 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00007: 2390200-2400199 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042815 5273 Angiosperm View MSA
121346314 5274 Embryophyte View MSA
123424294 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain