Gene : evm_27.TU.AmTr_v1.0_scaffold00010.483 A. trichopoda v1.0
Defline:  (1 of 2) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  479
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00010.483 Secondary Identifier:  ? PAC:31573143
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda GLYCOGENSYNTH-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-622 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00010.483 0.5kb upstream 0.5kb upstream 10443 true AmTr_v1.0_scaffold00010: 8086540-8096982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00010: 8086540-8087039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 0.5kb downstream 0.5kb downstream 10443 true AmTr_v1.0_scaffold00010: 8087040-8097482 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00010: 8096983-8097482 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 1.0kb upstream 1.0kb upstream 10943 true AmTr_v1.0_scaffold00010: 8086040-8096982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00010: 8086040-8087039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 1.0kb downstream 1.0kb downstream 10943 true AmTr_v1.0_scaffold00010: 8087040-8097982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00010: 8096983-8097982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 2.0kb upstream 2.0kb upstream 11943 true AmTr_v1.0_scaffold00010: 8085040-8096982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00010: 8085040-8087039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 2.0kb downstream 2.0kb downstream 11943 true AmTr_v1.0_scaffold00010: 8087040-8098982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00010: 8096983-8098982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 5.0kb upstream 5.0kb upstream 14943 true AmTr_v1.0_scaffold00010: 8082040-8096982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00010: 8082040-8087039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 5.0kb downstream 5.0kb downstream 14943 true AmTr_v1.0_scaffold00010: 8087040-8101982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00010: 8096983-8101982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 10.0kb upstream 10.0kb upstream 19943 true AmTr_v1.0_scaffold00010: 8077040-8096982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00010: 8077040-8087039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 10.0kb downstream 10.0kb downstream 19943 true AmTr_v1.0_scaffold00010: 8087040-8106982 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.483 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00010: 8096983-8106982 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042262 5273 Angiosperm View MSA
121347324 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain