Gene : evm_27.TU.AmTr_v1.0_scaffold00010.246 A. trichopoda v1.0
Defline:  (1 of 1) PTHR21297:SF1 - DNA-DIRECTED RNA POLYMERASE II PROTEIN Genomic Order:  245
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00010.246 Secondary Identifier:  ? PAC:31572671
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-6352 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00010.246 0.5kb upstream 0.5kb upstream 13667 true AmTr_v1.0_scaffold00010: 4639957-4653623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00010: 4639957-4640456 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 0.5kb downstream 0.5kb downstream 13667 true AmTr_v1.0_scaffold00010: 4640457-4654123 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00010: 4653624-4654123 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 1.0kb upstream 1.0kb upstream 14167 true AmTr_v1.0_scaffold00010: 4639457-4653623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00010: 4639457-4640456 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 1.0kb downstream 1.0kb downstream 14167 true AmTr_v1.0_scaffold00010: 4640457-4654623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00010: 4653624-4654623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 2.0kb upstream 2.0kb upstream 15167 true AmTr_v1.0_scaffold00010: 4638457-4653623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00010: 4638457-4640456 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 2.0kb downstream 2.0kb downstream 15167 true AmTr_v1.0_scaffold00010: 4640457-4655623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00010: 4653624-4655623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 5.0kb upstream 5.0kb upstream 18167 true AmTr_v1.0_scaffold00010: 4635457-4653623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00010: 4635457-4640456 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 5.0kb downstream 5.0kb downstream 18167 true AmTr_v1.0_scaffold00010: 4640457-4658623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00010: 4653624-4658623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 10.0kb upstream 10.0kb upstream 23167 true AmTr_v1.0_scaffold00010: 4630457-4653623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00010: 4630457-4640456 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 10.0kb downstream 10.0kb downstream 23167 true AmTr_v1.0_scaffold00010: 4640457-4663623 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00010.246 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00010: 4653624-4663623 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041351 5273 Angiosperm View MSA
121346749 5274 Embryophyte View MSA
123424526 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain