Gene : evm_27.TU.AmTr_v1.0_scaffold00012.115 A. trichopoda v1.0
Defline:  (1 of 8) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  115
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00012.115 Secondary Identifier:  ? PAC:31552950
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CALVIN-PWY Amborella trichopoda pathologic  
Atrichopoda PHOTOALL-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-5723 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00012.115 0.5kb upstream 0.5kb upstream 1998 true AmTr_v1.0_scaffold00012: 3155999-3157996 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00012: 3157497-3157996 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 0.5kb downstream 0.5kb downstream 1998 true AmTr_v1.0_scaffold00012: 3155499-3157496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00012: 3155499-3155998 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 1.0kb upstream 1.0kb upstream 2498 true AmTr_v1.0_scaffold00012: 3155999-3158496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00012: 3157497-3158496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 1.0kb downstream 1.0kb downstream 2498 true AmTr_v1.0_scaffold00012: 3154999-3157496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00012: 3154999-3155998 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 2.0kb upstream 2.0kb upstream 3498 true AmTr_v1.0_scaffold00012: 3155999-3159496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00012: 3157497-3159496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 2.0kb downstream 2.0kb downstream 3498 true AmTr_v1.0_scaffold00012: 3153999-3157496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00012: 3153999-3155998 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 5.0kb upstream 5.0kb upstream 6498 true AmTr_v1.0_scaffold00012: 3155999-3162496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00012: 3157497-3162496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 5.0kb downstream 5.0kb downstream 6498 true AmTr_v1.0_scaffold00012: 3150999-3157496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00012: 3150999-3155998 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 10.0kb upstream 10.0kb upstream 11498 true AmTr_v1.0_scaffold00012: 3155999-3167496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00012: 3157497-3167496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 10.0kb downstream 10.0kb downstream 11498 true AmTr_v1.0_scaffold00012: 3145999-3157496 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00012.115 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00012: 3145999-3155998 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122051262 5273 Angiosperm View MSA
121312381 5274 Embryophyte View MSA
123349558 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain