Gene : evm_27.TU.AmTr_v1.0_scaffold00015.53 A. trichopoda v1.0
Defline:  (1 of 2) PTHR10742:SF260 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 Genomic Order:  52
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00015.53 Secondary Identifier:  ? PAC:31555842
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-6441 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00015.53 0.5kb upstream 0.5kb upstream 4056 true AmTr_v1.0_scaffold00015: 3652984-3657039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00015: 3652984-3653483 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 0.5kb downstream 0.5kb downstream 4056 true AmTr_v1.0_scaffold00015: 3653484-3657539 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00015: 3657040-3657539 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 1.0kb upstream 1.0kb upstream 4556 true AmTr_v1.0_scaffold00015: 3652484-3657039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00015: 3652484-3653483 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 1.0kb downstream 1.0kb downstream 4556 true AmTr_v1.0_scaffold00015: 3653484-3658039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00015: 3657040-3658039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 2.0kb upstream 2.0kb upstream 5556 true AmTr_v1.0_scaffold00015: 3651484-3657039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00015: 3651484-3653483 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 2.0kb downstream 2.0kb downstream 5556 true AmTr_v1.0_scaffold00015: 3653484-3659039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00015: 3657040-3659039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 5.0kb upstream 5.0kb upstream 8556 true AmTr_v1.0_scaffold00015: 3648484-3657039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00015: 3648484-3653483 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 5.0kb downstream 5.0kb downstream 8556 true AmTr_v1.0_scaffold00015: 3653484-3662039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00015: 3657040-3662039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 10.0kb upstream 10.0kb upstream 13556 true AmTr_v1.0_scaffold00015: 3643484-3657039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00015: 3643484-3653483 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 10.0kb downstream 10.0kb downstream 13556 true AmTr_v1.0_scaffold00015: 3653484-3667039 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00015.53 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00015: 3657040-3667039 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046966 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain