Gene : evm_27.TU.AmTr_v1.0_scaffold00013.95 A. trichopoda v1.0
Defline:  (1 of 2) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Genomic Order:  94
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00013.95 Secondary Identifier:  ? PAC:31550658
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-1269 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00013.95 0.5kb upstream 0.5kb upstream 11633 true AmTr_v1.0_scaffold00013: 2792007-2803639 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00013: 2803140-2803639 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 0.5kb downstream 0.5kb downstream 11633 true AmTr_v1.0_scaffold00013: 2791507-2803139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00013: 2791507-2792006 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 1.0kb upstream 1.0kb upstream 12133 true AmTr_v1.0_scaffold00013: 2792007-2804139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00013: 2803140-2804139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 1.0kb downstream 1.0kb downstream 12133 true AmTr_v1.0_scaffold00013: 2791007-2803139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00013: 2791007-2792006 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 2.0kb upstream 2.0kb upstream 13133 true AmTr_v1.0_scaffold00013: 2792007-2805139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00013: 2803140-2805139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 2.0kb downstream 2.0kb downstream 13133 true AmTr_v1.0_scaffold00013: 2790007-2803139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00013: 2790007-2792006 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 5.0kb upstream 5.0kb upstream 16133 true AmTr_v1.0_scaffold00013: 2792007-2808139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00013: 2803140-2808139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 5.0kb downstream 5.0kb downstream 16133 true AmTr_v1.0_scaffold00013: 2787007-2803139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00013: 2787007-2792006 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 10.0kb upstream 10.0kb upstream 21133 true AmTr_v1.0_scaffold00013: 2792007-2813139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00013: 2803140-2813139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 10.0kb downstream 10.0kb downstream 21133 true AmTr_v1.0_scaffold00013: 2782007-2803139 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00013.95 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00013: 2782007-2792006 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain