Gene : evm_27.TU.AmTr_v1.0_scaffold00016.302 A. trichopoda v1.0
Defline:  (1 of 2) 1.2.1.13 - Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating) / Triosephosphate dehydrogenase (NADP+) Genomic Order:  298
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00016.302 Secondary Identifier:  ? PAC:31569868
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda ANAEROFRUCAT-PWY Amborella trichopoda pathologic  
Atrichopoda ANAGLYCOLYSIS-PWY Amborella trichopoda pathologic  
Atrichopoda CALVIN-PWY Amborella trichopoda pathologic  
Atrichopoda GLUCONEO-PWY Amborella trichopoda pathologic  
Atrichopoda PHOTOALL-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-1042 Amborella trichopoda pathologic  
Atrichopoda PWY-5464 Amborella trichopoda pathologic  
Atrichopoda SUCSYN-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00016.302 0.5kb upstream 0.5kb upstream 7713 true AmTr_v1.0_scaffold00016: 6497321-6505033 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00016: 6504534-6505033 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 0.5kb downstream 0.5kb downstream 7713 true AmTr_v1.0_scaffold00016: 6496821-6504533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00016: 6496821-6497320 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 1.0kb upstream 1.0kb upstream 8213 true AmTr_v1.0_scaffold00016: 6497321-6505533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00016: 6504534-6505533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 1.0kb downstream 1.0kb downstream 8213 true AmTr_v1.0_scaffold00016: 6496321-6504533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00016: 6496321-6497320 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 2.0kb upstream 2.0kb upstream 9213 true AmTr_v1.0_scaffold00016: 6497321-6506533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00016: 6504534-6506533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 2.0kb downstream 2.0kb downstream 9213 true AmTr_v1.0_scaffold00016: 6495321-6504533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00016: 6495321-6497320 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 5.0kb upstream 5.0kb upstream 12213 true AmTr_v1.0_scaffold00016: 6497321-6509533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00016: 6504534-6509533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 5.0kb downstream 5.0kb downstream 12213 true AmTr_v1.0_scaffold00016: 6492321-6504533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00016: 6492321-6497320 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 10.0kb upstream 10.0kb upstream 17213 true AmTr_v1.0_scaffold00016: 6497321-6514533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00016: 6504534-6514533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 10.0kb downstream 10.0kb downstream 17213 true AmTr_v1.0_scaffold00016: 6487321-6504533 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00016.302 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00016: 6487321-6497320 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122045489 5273 Angiosperm View MSA
121346351 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain