Gene : evm_27.TU.AmTr_v1.0_scaffold00021.237 A. trichopoda v1.0
Defline:  (1 of 3) PTHR10315:SF34 - E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  236
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00021.237 Secondary Identifier:  ? PAC:31563423
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-7511 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00021.237 0.5kb upstream 0.5kb upstream 11917 true AmTr_v1.0_scaffold00021: 5224554-5236470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00021: 5224554-5225053 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 0.5kb downstream 0.5kb downstream 11917 true AmTr_v1.0_scaffold00021: 5225054-5236970 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00021: 5236471-5236970 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 1.0kb upstream 1.0kb upstream 12417 true AmTr_v1.0_scaffold00021: 5224054-5236470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00021: 5224054-5225053 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 1.0kb downstream 1.0kb downstream 12417 true AmTr_v1.0_scaffold00021: 5225054-5237470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00021: 5236471-5237470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 2.0kb upstream 2.0kb upstream 13417 true AmTr_v1.0_scaffold00021: 5223054-5236470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00021: 5223054-5225053 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 2.0kb downstream 2.0kb downstream 13417 true AmTr_v1.0_scaffold00021: 5225054-5238470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00021: 5236471-5238470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 5.0kb upstream 5.0kb upstream 16417 true AmTr_v1.0_scaffold00021: 5220054-5236470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00021: 5220054-5225053 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 5.0kb downstream 5.0kb downstream 16417 true AmTr_v1.0_scaffold00021: 5225054-5241470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00021: 5236471-5241470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 10.0kb upstream 10.0kb upstream 21417 true AmTr_v1.0_scaffold00021: 5215054-5236470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00021: 5215054-5225053 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 10.0kb downstream 10.0kb downstream 21417 true AmTr_v1.0_scaffold00021: 5225054-5246470 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00021.237 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00021: 5236471-5246470 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain