Gene : evm_27.TU.AmTr_v1.0_scaffold00025.118 A. trichopoda v1.0
Defline:  (1 of 1) PTHR30373:SF2 - UPF0603 PROTEIN YGCG Genomic Order:  118
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00025.118 Secondary Identifier:  ? PAC:31566360
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-5083 Amborella trichopoda pathologic  
Atrichopoda PWY-6348 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00025.118 0.5kb upstream 0.5kb upstream 5162 true AmTr_v1.0_scaffold00025: 1715986-1721147 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00025: 1720648-1721147 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 0.5kb downstream 0.5kb downstream 5162 true AmTr_v1.0_scaffold00025: 1715486-1720647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00025: 1715486-1715985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 1.0kb upstream 1.0kb upstream 5662 true AmTr_v1.0_scaffold00025: 1715986-1721647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00025: 1720648-1721647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 1.0kb downstream 1.0kb downstream 5662 true AmTr_v1.0_scaffold00025: 1714986-1720647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00025: 1714986-1715985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 2.0kb upstream 2.0kb upstream 6662 true AmTr_v1.0_scaffold00025: 1715986-1722647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00025: 1720648-1722647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 2.0kb downstream 2.0kb downstream 6662 true AmTr_v1.0_scaffold00025: 1713986-1720647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00025: 1713986-1715985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 5.0kb upstream 5.0kb upstream 9662 true AmTr_v1.0_scaffold00025: 1715986-1725647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00025: 1720648-1725647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 5.0kb downstream 5.0kb downstream 9662 true AmTr_v1.0_scaffold00025: 1710986-1720647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00025: 1710986-1715985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 10.0kb upstream 10.0kb upstream 14662 true AmTr_v1.0_scaffold00025: 1715986-1730647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00025: 1720648-1730647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 10.0kb downstream 10.0kb downstream 14662 true AmTr_v1.0_scaffold00025: 1705986-1720647 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.118 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00025: 1705986-1715985 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046154 5273 Angiosperm View MSA
121349050 5274 Embryophyte View MSA
123424307 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain