Gene : evm_27.TU.AmTr_v1.0_scaffold00025.323 A. trichopoda v1.0
Defline:  (1 of 2) PTHR11540:SF14 - MALATE DEHYDROGENASE, CHLOROPLASTIC Genomic Order:  323
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00025.323 Secondary Identifier:  ? PAC:31566614
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda GLUCONEO-PWY Amborella trichopoda pathologic  
Atrichopoda GLYOXYLATE-BYPASS Amborella trichopoda pathologic  
Atrichopoda PWY-5464 Amborella trichopoda pathologic  
Atrichopoda PWY-561 Amborella trichopoda pathologic  
Atrichopoda PWY-5690 Amborella trichopoda pathologic  
Atrichopoda PWY-7115 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00025.323 0.5kb upstream 0.5kb upstream 1811 true AmTr_v1.0_scaffold00025: 4786107-4787917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00025: 4786107-4786606 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 0.5kb downstream 0.5kb downstream 1811 true AmTr_v1.0_scaffold00025: 4786607-4788417 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00025: 4787918-4788417 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 1.0kb upstream 1.0kb upstream 2311 true AmTr_v1.0_scaffold00025: 4785607-4787917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00025: 4785607-4786606 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 1.0kb downstream 1.0kb downstream 2311 true AmTr_v1.0_scaffold00025: 4786607-4788917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00025: 4787918-4788917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 2.0kb upstream 2.0kb upstream 3311 true AmTr_v1.0_scaffold00025: 4784607-4787917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00025: 4784607-4786606 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 2.0kb downstream 2.0kb downstream 3311 true AmTr_v1.0_scaffold00025: 4786607-4789917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00025: 4787918-4789917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 5.0kb upstream 5.0kb upstream 6311 true AmTr_v1.0_scaffold00025: 4781607-4787917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00025: 4781607-4786606 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 5.0kb downstream 5.0kb downstream 6311 true AmTr_v1.0_scaffold00025: 4786607-4792917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00025: 4787918-4792917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 10.0kb upstream 10.0kb upstream 11311 true AmTr_v1.0_scaffold00025: 4776607-4787917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00025: 4776607-4786606 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 10.0kb downstream 10.0kb downstream 11311 true AmTr_v1.0_scaffold00025: 4786607-4797917 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00025.323 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00025: 4787918-4797917 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122049358 5273 Angiosperm View MSA
121344647 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain