Gene : evm_27.TU.AmTr_v1.0_scaffold00033.71 A. trichopoda v1.0
Defline:  (1 of 1) PTHR22594:SF5 - ASPARTATE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  70
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00033.71 Secondary Identifier:  ? PAC:31561909
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00033.71 0.5kb upstream 0.5kb upstream 13488 true AmTr_v1.0_scaffold00033: 1905206-1918693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00033: 1905206-1905705 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 0.5kb downstream 0.5kb downstream 13488 true AmTr_v1.0_scaffold00033: 1905706-1919193 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00033: 1918694-1919193 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 1.0kb upstream 1.0kb upstream 13988 true AmTr_v1.0_scaffold00033: 1904706-1918693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00033: 1904706-1905705 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 1.0kb downstream 1.0kb downstream 13988 true AmTr_v1.0_scaffold00033: 1905706-1919693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00033: 1918694-1919693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 2.0kb upstream 2.0kb upstream 14988 true AmTr_v1.0_scaffold00033: 1903706-1918693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00033: 1903706-1905705 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 2.0kb downstream 2.0kb downstream 14988 true AmTr_v1.0_scaffold00033: 1905706-1920693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00033: 1918694-1920693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 5.0kb upstream 5.0kb upstream 17988 true AmTr_v1.0_scaffold00033: 1900706-1918693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00033: 1900706-1905705 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 5.0kb downstream 5.0kb downstream 17988 true AmTr_v1.0_scaffold00033: 1905706-1923693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00033: 1918694-1923693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 10.0kb upstream 10.0kb upstream 22988 true AmTr_v1.0_scaffold00033: 1895706-1918693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00033: 1895706-1905705 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 10.0kb downstream 10.0kb downstream 22988 true AmTr_v1.0_scaffold00033: 1905706-1928693 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.71 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00033: 1918694-1928693 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041718 5273 Angiosperm View MSA
121346039 5274 Embryophyte View MSA
123424871 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain