Gene : evm_27.TU.AmTr_v1.0_scaffold00033.199 A. trichopoda v1.0
Defline:  (1 of 5) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  197
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00033.199 Secondary Identifier:  ? PAC:31561841
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-7560 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00033.199 0.5kb upstream 0.5kb upstream 5404 true AmTr_v1.0_scaffold00033: 4472777-4478180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00033: 4472777-4473276 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 0.5kb downstream 0.5kb downstream 5404 true AmTr_v1.0_scaffold00033: 4473277-4478680 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00033: 4478181-4478680 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 1.0kb upstream 1.0kb upstream 5904 true AmTr_v1.0_scaffold00033: 4472277-4478180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00033: 4472277-4473276 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 1.0kb downstream 1.0kb downstream 5904 true AmTr_v1.0_scaffold00033: 4473277-4479180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00033: 4478181-4479180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 2.0kb upstream 2.0kb upstream 6904 true AmTr_v1.0_scaffold00033: 4471277-4478180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00033: 4471277-4473276 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 2.0kb downstream 2.0kb downstream 6904 true AmTr_v1.0_scaffold00033: 4473277-4480180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00033: 4478181-4480180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 5.0kb upstream 5.0kb upstream 9904 true AmTr_v1.0_scaffold00033: 4468277-4478180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00033: 4468277-4473276 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 5.0kb downstream 5.0kb downstream 9904 true AmTr_v1.0_scaffold00033: 4473277-4483180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00033: 4478181-4483180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 10.0kb upstream 10.0kb upstream 14904 true AmTr_v1.0_scaffold00033: 4463277-4478180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00033: 4463277-4473276 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 10.0kb downstream 10.0kb downstream 14904 true AmTr_v1.0_scaffold00033: 4473277-4488180 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00033.199 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00033: 4478181-4488180 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain