Gene : evm_27.TU.AmTr_v1.0_scaffold00032.268 A. trichopoda v1.0
Defline:  (1 of 1) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  267
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00032.268 Secondary Identifier:  ? PAC:31560180
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-6689 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00032.268 0.5kb upstream 0.5kb upstream 1232 true AmTr_v1.0_scaffold00032: 5318163-5319394 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00032: 5318895-5319394 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 0.5kb downstream 0.5kb downstream 1232 true AmTr_v1.0_scaffold00032: 5317663-5318894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00032: 5317663-5318162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 1.0kb upstream 1.0kb upstream 1732 true AmTr_v1.0_scaffold00032: 5318163-5319894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00032: 5318895-5319894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 1.0kb downstream 1.0kb downstream 1732 true AmTr_v1.0_scaffold00032: 5317163-5318894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00032: 5317163-5318162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 2.0kb upstream 2.0kb upstream 2732 true AmTr_v1.0_scaffold00032: 5318163-5320894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00032: 5318895-5320894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 2.0kb downstream 2.0kb downstream 2732 true AmTr_v1.0_scaffold00032: 5316163-5318894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00032: 5316163-5318162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 5.0kb upstream 5.0kb upstream 5732 true AmTr_v1.0_scaffold00032: 5318163-5323894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00032: 5318895-5323894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 5.0kb downstream 5.0kb downstream 5732 true AmTr_v1.0_scaffold00032: 5313163-5318894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00032: 5313163-5318162 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 10.0kb upstream 10.0kb upstream 10732 true AmTr_v1.0_scaffold00032: 5318163-5328894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00032: 5318895-5328894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 10.0kb downstream 10.0kb downstream 10732 true AmTr_v1.0_scaffold00032: 5308163-5318894 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00032.268 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00032: 5308163-5318162 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain