Gene : evm_27.TU.AmTr_v1.0_scaffold00036.108 A. trichopoda v1.0
Defline:  (1 of 1) PTHR10947 - PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 Genomic Order:  105
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00036.108 Secondary Identifier:  ? PAC:31554340
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00036.108 0.5kb upstream 0.5kb upstream 52169 true AmTr_v1.0_scaffold00036: 3511317-3563485 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00036: 3562986-3563485 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 0.5kb downstream 0.5kb downstream 52169 true AmTr_v1.0_scaffold00036: 3510817-3562985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00036: 3510817-3511316 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 1.0kb upstream 1.0kb upstream 52669 true AmTr_v1.0_scaffold00036: 3511317-3563985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00036: 3562986-3563985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 1.0kb downstream 1.0kb downstream 52669 true AmTr_v1.0_scaffold00036: 3510317-3562985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00036: 3510317-3511316 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 2.0kb upstream 2.0kb upstream 53669 true AmTr_v1.0_scaffold00036: 3511317-3564985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00036: 3562986-3564985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 2.0kb downstream 2.0kb downstream 53669 true AmTr_v1.0_scaffold00036: 3509317-3562985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00036: 3509317-3511316 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 5.0kb upstream 5.0kb upstream 56669 true AmTr_v1.0_scaffold00036: 3511317-3567985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00036: 3562986-3567985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 5.0kb downstream 5.0kb downstream 56669 true AmTr_v1.0_scaffold00036: 3506317-3562985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00036: 3506317-3511316 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 10.0kb upstream 10.0kb upstream 61669 true AmTr_v1.0_scaffold00036: 3511317-3572985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00036: 3562986-3572985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 10.0kb downstream 10.0kb downstream 61669 true AmTr_v1.0_scaffold00036: 3501317-3562985 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00036.108 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00036: 3501317-3511316 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042437 5273 Angiosperm View MSA
121345306 5274 Embryophyte View MSA
123425015 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain