Gene : evm_27.TU.AmTr_v1.0_scaffold00039.199 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11405:SF37 - CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN, CHLOROPLASTIC Genomic Order:  194
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00039.199 Secondary Identifier:  ? PAC:31565299
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda ARGSYNBSUB-PWY Amborella trichopoda pathologic  
Atrichopoda ARGSYN-PWY Amborella trichopoda pathologic  
Atrichopoda CITRULBIO-PWY Amborella trichopoda pathologic  
Atrichopoda GLUTAMINDEG-PWY Amborella trichopoda pathologic  
Atrichopoda PWY0-162 Amborella trichopoda pathologic  
Atrichopoda PWY-4984 Amborella trichopoda pathologic  
Atrichopoda PWY-5686 Amborella trichopoda pathologic  
Atrichopoda PWY-7211 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00039.199 0.5kb upstream 0.5kb upstream 6575 true AmTr_v1.0_scaffold00039: 4581236-4587810 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00039: 4587311-4587810 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 0.5kb downstream 0.5kb downstream 6575 true AmTr_v1.0_scaffold00039: 4580736-4587310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00039: 4580736-4581235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 1.0kb upstream 1.0kb upstream 7075 true AmTr_v1.0_scaffold00039: 4581236-4588310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00039: 4587311-4588310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 1.0kb downstream 1.0kb downstream 7075 true AmTr_v1.0_scaffold00039: 4580236-4587310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00039: 4580236-4581235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 2.0kb upstream 2.0kb upstream 8075 true AmTr_v1.0_scaffold00039: 4581236-4589310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00039: 4587311-4589310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 2.0kb downstream 2.0kb downstream 8075 true AmTr_v1.0_scaffold00039: 4579236-4587310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00039: 4579236-4581235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 5.0kb upstream 5.0kb upstream 11075 true AmTr_v1.0_scaffold00039: 4581236-4592310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00039: 4587311-4592310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 5.0kb downstream 5.0kb downstream 11075 true AmTr_v1.0_scaffold00039: 4576236-4587310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00039: 4576236-4581235 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 10.0kb upstream 10.0kb upstream 16075 true AmTr_v1.0_scaffold00039: 4581236-4597310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00039: 4587311-4597310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 10.0kb downstream 10.0kb downstream 16075 true AmTr_v1.0_scaffold00039: 4571236-4587310 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00039.199 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00039: 4571236-4581235 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain