Gene : evm_27.TU.AmTr_v1.0_scaffold00045.272 A. trichopoda v1.0
Defline:  (1 of 2) 6.1.1.5 - Isoleucine--tRNA ligase / Isoleucyl-tRNA synthetase Genomic Order:  271
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00045.272 Secondary Identifier:  ? PAC:31567668
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00045.272 0.5kb upstream 0.5kb upstream 36893 true AmTr_v1.0_scaffold00045: 3862570-3899462 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00045: 3898963-3899462 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 0.5kb downstream 0.5kb downstream 36893 true AmTr_v1.0_scaffold00045: 3862070-3898962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00045: 3862070-3862569 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 1.0kb upstream 1.0kb upstream 37393 true AmTr_v1.0_scaffold00045: 3862570-3899962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00045: 3898963-3899962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 1.0kb downstream 1.0kb downstream 37393 true AmTr_v1.0_scaffold00045: 3861570-3898962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00045: 3861570-3862569 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 2.0kb upstream 2.0kb upstream 38393 true AmTr_v1.0_scaffold00045: 3862570-3900962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00045: 3898963-3900962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 2.0kb downstream 2.0kb downstream 38393 true AmTr_v1.0_scaffold00045: 3860570-3898962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00045: 3860570-3862569 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 5.0kb upstream 5.0kb upstream 41393 true AmTr_v1.0_scaffold00045: 3862570-3903962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00045: 3898963-3903962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 5.0kb downstream 5.0kb downstream 41393 true AmTr_v1.0_scaffold00045: 3857570-3898962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00045: 3857570-3862569 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 10.0kb upstream 10.0kb upstream 46393 true AmTr_v1.0_scaffold00045: 3862570-3908962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00045: 3898963-3908962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 10.0kb downstream 10.0kb downstream 46393 true AmTr_v1.0_scaffold00045: 3852570-3898962 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.272 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00045: 3852570-3862569 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042566 5273 Angiosperm View MSA
121346634 5274 Embryophyte View MSA
123424788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain