Gene : evm_27.TU.AmTr_v1.0_scaffold00045.45 A. trichopoda v1.0
Defline:  (1 of 1) PTHR12998:SF0 - TRNA:M(4)X MODIFICATION ENZYME TRM13 HOMOLOG Genomic Order:  44
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00045.45 Secondary Identifier:  ? PAC:31567644
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-6829 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00045.45 0.5kb upstream 0.5kb upstream 7916 true AmTr_v1.0_scaffold00045: 627387-635302 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00045: 634803-635302 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 0.5kb downstream 0.5kb downstream 7916 true AmTr_v1.0_scaffold00045: 626887-634802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00045: 626887-627386 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 1.0kb upstream 1.0kb upstream 8416 true AmTr_v1.0_scaffold00045: 627387-635802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00045: 634803-635802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 1.0kb downstream 1.0kb downstream 8416 true AmTr_v1.0_scaffold00045: 626387-634802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00045: 626387-627386 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 2.0kb upstream 2.0kb upstream 9416 true AmTr_v1.0_scaffold00045: 627387-636802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00045: 634803-636802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 2.0kb downstream 2.0kb downstream 9416 true AmTr_v1.0_scaffold00045: 625387-634802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00045: 625387-627386 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 5.0kb upstream 5.0kb upstream 12416 true AmTr_v1.0_scaffold00045: 627387-639802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00045: 634803-639802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 5.0kb downstream 5.0kb downstream 12416 true AmTr_v1.0_scaffold00045: 622387-634802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00045: 622387-627386 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 10.0kb upstream 10.0kb upstream 17416 true AmTr_v1.0_scaffold00045: 627387-644802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00045: 634803-644802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 10.0kb downstream 10.0kb downstream 17416 true AmTr_v1.0_scaffold00045: 617387-634802 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.45 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00045: 617387-627386 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046541 5273 Angiosperm View MSA
121347915 5274 Embryophyte View MSA
123424709 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain