Gene : evm_27.TU.AmTr_v1.0_scaffold00045.138 A. trichopoda v1.0
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  137
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00045.138 Secondary Identifier:  ? PAC:31567708
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CHLOROPHYLL-SYN Amborella trichopoda pathologic  
Atrichopoda HEME-BIOSYNTHESIS-II Amborella trichopoda pathologic  
Atrichopoda PWY-5918 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00045.138 0.5kb upstream 0.5kb upstream 12016 true AmTr_v1.0_scaffold00045: 1919133-1931148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00045: 1919133-1919632 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 0.5kb downstream 0.5kb downstream 12016 true AmTr_v1.0_scaffold00045: 1919633-1931648 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00045: 1931149-1931648 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 1.0kb upstream 1.0kb upstream 12516 true AmTr_v1.0_scaffold00045: 1918633-1931148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00045: 1918633-1919632 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 1.0kb downstream 1.0kb downstream 12516 true AmTr_v1.0_scaffold00045: 1919633-1932148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00045: 1931149-1932148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 2.0kb upstream 2.0kb upstream 13516 true AmTr_v1.0_scaffold00045: 1917633-1931148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00045: 1917633-1919632 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 2.0kb downstream 2.0kb downstream 13516 true AmTr_v1.0_scaffold00045: 1919633-1933148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00045: 1931149-1933148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 5.0kb upstream 5.0kb upstream 16516 true AmTr_v1.0_scaffold00045: 1914633-1931148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00045: 1914633-1919632 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 5.0kb downstream 5.0kb downstream 16516 true AmTr_v1.0_scaffold00045: 1919633-1936148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00045: 1931149-1936148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 10.0kb upstream 10.0kb upstream 21516 true AmTr_v1.0_scaffold00045: 1909633-1931148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00045: 1909633-1919632 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 10.0kb downstream 10.0kb downstream 21516 true AmTr_v1.0_scaffold00045: 1919633-1941148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00045.138 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00045: 1931149-1941148 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain