Gene : evm_27.TU.AmTr_v1.0_scaffold00048.149 A. trichopoda v1.0
Defline:  (1 of 274) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  148
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00048.149 Secondary Identifier:  ? PAC:31555513
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00048.149 0.5kb upstream 0.5kb upstream 2639 true AmTr_v1.0_scaffold00048: 3390859-3393497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00048: 3390859-3391358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 0.5kb downstream 0.5kb downstream 2639 true AmTr_v1.0_scaffold00048: 3391359-3393997 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00048: 3393498-3393997 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 1.0kb upstream 1.0kb upstream 3139 true AmTr_v1.0_scaffold00048: 3390359-3393497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00048: 3390359-3391358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 1.0kb downstream 1.0kb downstream 3139 true AmTr_v1.0_scaffold00048: 3391359-3394497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00048: 3393498-3394497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 2.0kb upstream 2.0kb upstream 4139 true AmTr_v1.0_scaffold00048: 3389359-3393497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00048: 3389359-3391358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 2.0kb downstream 2.0kb downstream 4139 true AmTr_v1.0_scaffold00048: 3391359-3395497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00048: 3393498-3395497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 5.0kb upstream 5.0kb upstream 7139 true AmTr_v1.0_scaffold00048: 3386359-3393497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00048: 3386359-3391358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 5.0kb downstream 5.0kb downstream 7139 true AmTr_v1.0_scaffold00048: 3391359-3398497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00048: 3393498-3398497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 10.0kb upstream 10.0kb upstream 12139 true AmTr_v1.0_scaffold00048: 3381359-3393497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00048: 3381359-3391358 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 10.0kb downstream 10.0kb downstream 12139 true AmTr_v1.0_scaffold00048: 3391359-3403497 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.149 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00048: 3393498-3403497 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122045873 5273 Angiosperm View MSA
121310522 5274 Embryophyte View MSA
123347983 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain