Gene : evm_27.TU.AmTr_v1.0_scaffold00048.210 A. trichopoda v1.0
Defline:  (1 of 2) 6.1.1.11 - Serine--tRNA ligase / Seryl-tRNA synthetase Genomic Order:  208
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00048.210 Secondary Identifier:  ? PAC:31555512
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00048.210 0.5kb upstream 0.5kb upstream 7934 true AmTr_v1.0_scaffold00048: 4592494-4600427 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00048: 4599928-4600427 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 0.5kb downstream 0.5kb downstream 7934 true AmTr_v1.0_scaffold00048: 4591994-4599927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00048: 4591994-4592493 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 1.0kb upstream 1.0kb upstream 8434 true AmTr_v1.0_scaffold00048: 4592494-4600927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00048: 4599928-4600927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 1.0kb downstream 1.0kb downstream 8434 true AmTr_v1.0_scaffold00048: 4591494-4599927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00048: 4591494-4592493 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 2.0kb upstream 2.0kb upstream 9434 true AmTr_v1.0_scaffold00048: 4592494-4601927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00048: 4599928-4601927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 2.0kb downstream 2.0kb downstream 9434 true AmTr_v1.0_scaffold00048: 4590494-4599927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00048: 4590494-4592493 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 5.0kb upstream 5.0kb upstream 12434 true AmTr_v1.0_scaffold00048: 4592494-4604927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00048: 4599928-4604927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 5.0kb downstream 5.0kb downstream 12434 true AmTr_v1.0_scaffold00048: 4587494-4599927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00048: 4587494-4592493 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 10.0kb upstream 10.0kb upstream 17434 true AmTr_v1.0_scaffold00048: 4592494-4609927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00048: 4599928-4609927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 10.0kb downstream 10.0kb downstream 17434 true AmTr_v1.0_scaffold00048: 4582494-4599927 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00048.210 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00048: 4582494-4592493 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122045874 5273 Angiosperm View MSA
121344249 5274 Embryophyte View MSA
123424928 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain