Gene : evm_27.TU.AmTr_v1.0_scaffold00052.77 A. trichopoda v1.0
Defline:  (1 of 1) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  74
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00052.77 Secondary Identifier:  ? PAC:31574054
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CAROTENOID-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-5175 Amborella trichopoda pathologic  
Atrichopoda PWY-5946 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00052.77 0.5kb upstream 0.5kb upstream 20614 true AmTr_v1.0_scaffold00052: 2650679-2671292 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00052: 2670793-2671292 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 0.5kb downstream 0.5kb downstream 20614 true AmTr_v1.0_scaffold00052: 2650179-2670792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00052: 2650179-2650678 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 1.0kb upstream 1.0kb upstream 21114 true AmTr_v1.0_scaffold00052: 2650679-2671792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00052: 2670793-2671792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 1.0kb downstream 1.0kb downstream 21114 true AmTr_v1.0_scaffold00052: 2649679-2670792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00052: 2649679-2650678 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 2.0kb upstream 2.0kb upstream 22114 true AmTr_v1.0_scaffold00052: 2650679-2672792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00052: 2670793-2672792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 2.0kb downstream 2.0kb downstream 22114 true AmTr_v1.0_scaffold00052: 2648679-2670792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00052: 2648679-2650678 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 5.0kb upstream 5.0kb upstream 25114 true AmTr_v1.0_scaffold00052: 2650679-2675792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00052: 2670793-2675792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 5.0kb downstream 5.0kb downstream 25114 true AmTr_v1.0_scaffold00052: 2645679-2670792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00052: 2645679-2650678 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 10.0kb upstream 10.0kb upstream 30114 true AmTr_v1.0_scaffold00052: 2650679-2680792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00052: 2670793-2680792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 10.0kb downstream 10.0kb downstream 30114 true AmTr_v1.0_scaffold00052: 2640679-2670792 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00052.77 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00052: 2640679-2650678 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain