Gene : evm_27.TU.AmTr_v1.0_scaffold00055.161 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  160
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00055.161 Secondary Identifier:  ? PAC:31571725
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00055.161 0.5kb upstream 0.5kb upstream 73385 true AmTr_v1.0_scaffold00055: 4222570-4295954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00055: 4222570-4223069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 0.5kb downstream 0.5kb downstream 73385 true AmTr_v1.0_scaffold00055: 4223070-4296454 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00055: 4295955-4296454 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 1.0kb upstream 1.0kb upstream 73885 true AmTr_v1.0_scaffold00055: 4222070-4295954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00055: 4222070-4223069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 1.0kb downstream 1.0kb downstream 73885 true AmTr_v1.0_scaffold00055: 4223070-4296954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00055: 4295955-4296954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 2.0kb upstream 2.0kb upstream 74885 true AmTr_v1.0_scaffold00055: 4221070-4295954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00055: 4221070-4223069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 2.0kb downstream 2.0kb downstream 74885 true AmTr_v1.0_scaffold00055: 4223070-4297954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00055: 4295955-4297954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 5.0kb upstream 5.0kb upstream 77885 true AmTr_v1.0_scaffold00055: 4218070-4295954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00055: 4218070-4223069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 5.0kb downstream 5.0kb downstream 77885 true AmTr_v1.0_scaffold00055: 4223070-4300954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00055: 4295955-4300954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 10.0kb upstream 10.0kb upstream 82885 true AmTr_v1.0_scaffold00055: 4213070-4295954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00055: 4213070-4223069 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 10.0kb downstream 10.0kb downstream 82885 true AmTr_v1.0_scaffold00055: 4223070-4305954 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00055.161 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00055: 4295955-4305954 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain