Gene : evm_27.TU.AmTr_v1.0_scaffold00054.12 A. trichopoda v1.0
Defline:  (1 of 8) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  12
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00054.12 Secondary Identifier:  ? PAC:31564555
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CALVIN-PWY Amborella trichopoda pathologic  
Atrichopoda PHOTOALL-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-5723 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00054.12 0.5kb upstream 0.5kb upstream 13930 true AmTr_v1.0_scaffold00054: 323532-337461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00054: 323532-324031 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 0.5kb downstream 0.5kb downstream 13930 true AmTr_v1.0_scaffold00054: 324032-337961 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00054: 337462-337961 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 1.0kb upstream 1.0kb upstream 14430 true AmTr_v1.0_scaffold00054: 323032-337461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00054: 323032-324031 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 1.0kb downstream 1.0kb downstream 14430 true AmTr_v1.0_scaffold00054: 324032-338461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00054: 337462-338461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 2.0kb upstream 2.0kb upstream 15430 true AmTr_v1.0_scaffold00054: 322032-337461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00054: 322032-324031 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 2.0kb downstream 2.0kb downstream 15430 true AmTr_v1.0_scaffold00054: 324032-339461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00054: 337462-339461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 5.0kb upstream 5.0kb upstream 18430 true AmTr_v1.0_scaffold00054: 319032-337461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00054: 319032-324031 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 5.0kb downstream 5.0kb downstream 18430 true AmTr_v1.0_scaffold00054: 324032-342461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00054: 337462-342461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 10.0kb upstream 10.0kb upstream 23430 true AmTr_v1.0_scaffold00054: 314032-337461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00054: 314032-324031 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 10.0kb downstream 10.0kb downstream 23430 true AmTr_v1.0_scaffold00054: 324032-347461 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00054.12 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00054: 337462-347461 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048264 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain