Gene : evm_27.TU.AmTr_v1.0_scaffold00058.141 A. trichopoda v1.0
Defline:  (1 of 22) PF05553 - Cotton fibre expressed protein (DUF761) Genomic Order:  138
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00058.141 Secondary Identifier:  ? PAC:31559355
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00058.141 0.5kb upstream 0.5kb upstream 1055 true AmTr_v1.0_scaffold00058: 2514614-2515668 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00058: 2515169-2515668 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 0.5kb downstream 0.5kb downstream 1055 true AmTr_v1.0_scaffold00058: 2514114-2515168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00058: 2514114-2514613 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 1.0kb upstream 1.0kb upstream 1555 true AmTr_v1.0_scaffold00058: 2514614-2516168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00058: 2515169-2516168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 1.0kb downstream 1.0kb downstream 1555 true AmTr_v1.0_scaffold00058: 2513614-2515168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00058: 2513614-2514613 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 2.0kb upstream 2.0kb upstream 2555 true AmTr_v1.0_scaffold00058: 2514614-2517168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00058: 2515169-2517168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 2.0kb downstream 2.0kb downstream 2555 true AmTr_v1.0_scaffold00058: 2512614-2515168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00058: 2512614-2514613 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 5.0kb upstream 5.0kb upstream 5555 true AmTr_v1.0_scaffold00058: 2514614-2520168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00058: 2515169-2520168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 5.0kb downstream 5.0kb downstream 5555 true AmTr_v1.0_scaffold00058: 2509614-2515168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00058: 2509614-2514613 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 10.0kb upstream 10.0kb upstream 10555 true AmTr_v1.0_scaffold00058: 2514614-2525168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00058: 2515169-2525168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 10.0kb downstream 10.0kb downstream 10555 true AmTr_v1.0_scaffold00058: 2504614-2515168 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.141 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00058: 2504614-2514613 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048852 5273 Angiosperm View MSA
121311139 5274 Embryophyte View MSA
123348476 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain