Gene : evm_27.TU.AmTr_v1.0_scaffold00057.122 A. trichopoda v1.0
Defline:  (1 of 1) PTHR21089//PTHR21089:SF11 - SHIKIMATE DEHYDROGENASE Genomic Order:  121
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00057.122 Secondary Identifier:  ? PAC:31574303
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda ARO-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-6163 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00057.122 0.5kb upstream 0.5kb upstream 11289 true AmTr_v1.0_scaffold00057: 1949390-1960678 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00057: 1960179-1960678 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 0.5kb downstream 0.5kb downstream 11289 true AmTr_v1.0_scaffold00057: 1948890-1960178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00057: 1948890-1949389 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 1.0kb upstream 1.0kb upstream 11789 true AmTr_v1.0_scaffold00057: 1949390-1961178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00057: 1960179-1961178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 1.0kb downstream 1.0kb downstream 11789 true AmTr_v1.0_scaffold00057: 1948390-1960178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00057: 1948390-1949389 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 2.0kb upstream 2.0kb upstream 12789 true AmTr_v1.0_scaffold00057: 1949390-1962178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00057: 1960179-1962178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 2.0kb downstream 2.0kb downstream 12789 true AmTr_v1.0_scaffold00057: 1947390-1960178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00057: 1947390-1949389 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 5.0kb upstream 5.0kb upstream 15789 true AmTr_v1.0_scaffold00057: 1949390-1965178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00057: 1960179-1965178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 5.0kb downstream 5.0kb downstream 15789 true AmTr_v1.0_scaffold00057: 1944390-1960178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00057: 1944390-1949389 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 10.0kb upstream 10.0kb upstream 20789 true AmTr_v1.0_scaffold00057: 1949390-1970178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00057: 1960179-1970178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 10.0kb downstream 10.0kb downstream 20789 true AmTr_v1.0_scaffold00057: 1939390-1960178 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00057.122 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00057: 1939390-1949389 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain