Gene : evm_27.TU.AmTr_v1.0_scaffold00058.56 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11946:SF89 - METHIONYL-TRNA SYNTHETASE Genomic Order:  55
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00058.56 Secondary Identifier:  ? PAC:31559337
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00058.56 0.5kb upstream 0.5kb upstream 15103 true AmTr_v1.0_scaffold00058: 1232600-1247702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00058: 1232600-1233099 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 0.5kb downstream 0.5kb downstream 15103 true AmTr_v1.0_scaffold00058: 1233100-1248202 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00058: 1247703-1248202 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 1.0kb upstream 1.0kb upstream 15603 true AmTr_v1.0_scaffold00058: 1232100-1247702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00058: 1232100-1233099 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 1.0kb downstream 1.0kb downstream 15603 true AmTr_v1.0_scaffold00058: 1233100-1248702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00058: 1247703-1248702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 2.0kb upstream 2.0kb upstream 16603 true AmTr_v1.0_scaffold00058: 1231100-1247702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00058: 1231100-1233099 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 2.0kb downstream 2.0kb downstream 16603 true AmTr_v1.0_scaffold00058: 1233100-1249702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00058: 1247703-1249702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 5.0kb upstream 5.0kb upstream 19603 true AmTr_v1.0_scaffold00058: 1228100-1247702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00058: 1228100-1233099 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 5.0kb downstream 5.0kb downstream 19603 true AmTr_v1.0_scaffold00058: 1233100-1252702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00058: 1247703-1252702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 10.0kb upstream 10.0kb upstream 24603 true AmTr_v1.0_scaffold00058: 1223100-1247702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00058: 1223100-1233099 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 10.0kb downstream 10.0kb downstream 24603 true AmTr_v1.0_scaffold00058: 1233100-1257702 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.56 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00058: 1247703-1257702 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046373 5273 Angiosperm View MSA
121347151 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain