Gene : evm_27.TU.AmTr_v1.0_scaffold00061.238 A. trichopoda v1.0
Defline:  (1 of 3) 2.1.2.11 - 3-methyl-2-oxobutanoate hydroxymethyltransferase / Ketopantoate hydroxymethyltransferase Genomic Order:  231
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00061.238 Secondary Identifier:  ? PAC:31564765
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PANTO-PWY Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00061.238 0.5kb upstream 0.5kb upstream 4384 true AmTr_v1.0_scaffold00061: 3661996-3666379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00061: 3661996-3662495 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 0.5kb downstream 0.5kb downstream 4384 true AmTr_v1.0_scaffold00061: 3662496-3666879 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00061: 3666380-3666879 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 1.0kb upstream 1.0kb upstream 4884 true AmTr_v1.0_scaffold00061: 3661496-3666379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00061: 3661496-3662495 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 1.0kb downstream 1.0kb downstream 4884 true AmTr_v1.0_scaffold00061: 3662496-3667379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00061: 3666380-3667379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 2.0kb upstream 2.0kb upstream 5884 true AmTr_v1.0_scaffold00061: 3660496-3666379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00061: 3660496-3662495 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 2.0kb downstream 2.0kb downstream 5884 true AmTr_v1.0_scaffold00061: 3662496-3668379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00061: 3666380-3668379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 5.0kb upstream 5.0kb upstream 8884 true AmTr_v1.0_scaffold00061: 3657496-3666379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00061: 3657496-3662495 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 5.0kb downstream 5.0kb downstream 8884 true AmTr_v1.0_scaffold00061: 3662496-3671379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00061: 3666380-3671379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 10.0kb upstream 10.0kb upstream 13884 true AmTr_v1.0_scaffold00061: 3652496-3666379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00061: 3652496-3662495 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 10.0kb downstream 10.0kb downstream 13884 true AmTr_v1.0_scaffold00061: 3662496-3676379 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00061.238 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00061: 3666380-3676379 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047605 5273 Angiosperm View MSA
121346037 5274 Embryophyte View MSA
123424122 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain