Gene : evm_27.TU.AmTr_v1.0_scaffold00071.156 A. trichopoda v1.0
Defline:  (1 of 1) PF02900 - Catalytic LigB subunit of aromatic ring-opening dioxygenase (LigB) Genomic Order:  153
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00071.156 Secondary Identifier:  ? PAC:31561149
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00071.156 0.5kb upstream 0.5kb upstream 6596 true AmTr_v1.0_scaffold00071: 2532497-2539092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00071: 2532497-2532996 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 0.5kb downstream 0.5kb downstream 6596 true AmTr_v1.0_scaffold00071: 2532997-2539592 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00071: 2539093-2539592 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 1.0kb upstream 1.0kb upstream 7096 true AmTr_v1.0_scaffold00071: 2531997-2539092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00071: 2531997-2532996 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 1.0kb downstream 1.0kb downstream 7096 true AmTr_v1.0_scaffold00071: 2532997-2540092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00071: 2539093-2540092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 2.0kb upstream 2.0kb upstream 8096 true AmTr_v1.0_scaffold00071: 2530997-2539092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00071: 2530997-2532996 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 2.0kb downstream 2.0kb downstream 8096 true AmTr_v1.0_scaffold00071: 2532997-2541092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00071: 2539093-2541092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 5.0kb upstream 5.0kb upstream 11096 true AmTr_v1.0_scaffold00071: 2527997-2539092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00071: 2527997-2532996 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 5.0kb downstream 5.0kb downstream 11096 true AmTr_v1.0_scaffold00071: 2532997-2544092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00071: 2539093-2544092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 10.0kb upstream 10.0kb upstream 16096 true AmTr_v1.0_scaffold00071: 2522997-2539092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00071: 2522997-2532996 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 10.0kb downstream 10.0kb downstream 16096 true AmTr_v1.0_scaffold00071: 2532997-2549092 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00071.156 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00071: 2539093-2549092 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046323 5273 Angiosperm View MSA
121350065 5274 Embryophyte View MSA
123426386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain