Gene : evm_27.TU.AmTr_v1.0_scaffold00074.77 A. trichopoda v1.0
Defline:  (1 of 2) PTHR30372 - LIPID-A-DISACCHARIDE SYNTHASE Genomic Order:  77
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00074.77 Secondary Identifier:  ? PAC:31575712
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda NAGLIPASYN-PWY Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00074.77 0.5kb upstream 0.5kb upstream 20101 true AmTr_v1.0_scaffold00074: 2514329-2534429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00074: 2533930-2534429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 0.5kb downstream 0.5kb downstream 20101 true AmTr_v1.0_scaffold00074: 2513829-2533929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00074: 2513829-2514328 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 1.0kb upstream 1.0kb upstream 20601 true AmTr_v1.0_scaffold00074: 2514329-2534929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00074: 2533930-2534929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 1.0kb downstream 1.0kb downstream 20601 true AmTr_v1.0_scaffold00074: 2513329-2533929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00074: 2513329-2514328 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 2.0kb upstream 2.0kb upstream 21601 true AmTr_v1.0_scaffold00074: 2514329-2535929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00074: 2533930-2535929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 2.0kb downstream 2.0kb downstream 21601 true AmTr_v1.0_scaffold00074: 2512329-2533929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00074: 2512329-2514328 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 5.0kb upstream 5.0kb upstream 24601 true AmTr_v1.0_scaffold00074: 2514329-2538929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00074: 2533930-2538929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 5.0kb downstream 5.0kb downstream 24601 true AmTr_v1.0_scaffold00074: 2509329-2533929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00074: 2509329-2514328 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 10.0kb upstream 10.0kb upstream 29601 true AmTr_v1.0_scaffold00074: 2514329-2543929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00074: 2533930-2543929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 10.0kb downstream 10.0kb downstream 29601 true AmTr_v1.0_scaffold00074: 2504329-2533929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00074.77 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00074: 2504329-2514328 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042549 5273 Angiosperm View MSA
121345953 5274 Embryophyte View MSA
123380297 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain