Gene : evm_27.TU.AmTr_v1.0_scaffold00080.20 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11254:SF350 - E3 UBIQUITIN-PROTEIN LIGASE UPL4 Genomic Order:  20
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00080.20 Secondary Identifier:  ? PAC:31554462
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-7511 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00080.20 0.5kb upstream 0.5kb upstream 12847 true AmTr_v1.0_scaffold00080: 649969-662815 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00080: 662316-662815 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 0.5kb downstream 0.5kb downstream 12847 true AmTr_v1.0_scaffold00080: 649469-662315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00080: 649469-649968 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 1.0kb upstream 1.0kb upstream 13347 true AmTr_v1.0_scaffold00080: 649969-663315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00080: 662316-663315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 1.0kb downstream 1.0kb downstream 13347 true AmTr_v1.0_scaffold00080: 648969-662315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00080: 648969-649968 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 2.0kb upstream 2.0kb upstream 14347 true AmTr_v1.0_scaffold00080: 649969-664315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00080: 662316-664315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 2.0kb downstream 2.0kb downstream 14347 true AmTr_v1.0_scaffold00080: 647969-662315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00080: 647969-649968 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 5.0kb upstream 5.0kb upstream 17347 true AmTr_v1.0_scaffold00080: 649969-667315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00080: 662316-667315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 5.0kb downstream 5.0kb downstream 17347 true AmTr_v1.0_scaffold00080: 644969-662315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00080: 644969-649968 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 10.0kb upstream 10.0kb upstream 22347 true AmTr_v1.0_scaffold00080: 649969-672315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00080: 662316-672315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 10.0kb downstream 10.0kb downstream 22347 true AmTr_v1.0_scaffold00080: 639969-662315 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00080.20 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00080: 639969-649968 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain