Gene : evm_27.TU.AmTr_v1.0_scaffold00079.19 A. trichopoda v1.0
Defline:  (1 of 1) PF12338 - Ribulose-1,5-bisphosphate carboxylase small subunit (RbcS) Genomic Order:  18
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00079.19 Secondary Identifier:  ? PAC:31564406
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CALVIN-PWY Amborella trichopoda pathologic  
Atrichopoda PHOTOALL-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-5723 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00079.19 0.5kb upstream 0.5kb upstream 1893 true AmTr_v1.0_scaffold00079: 611819-613711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00079: 613212-613711 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 0.5kb downstream 0.5kb downstream 1893 true AmTr_v1.0_scaffold00079: 611319-613211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00079: 611319-611818 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 1.0kb upstream 1.0kb upstream 2393 true AmTr_v1.0_scaffold00079: 611819-614211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00079: 613212-614211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 1.0kb downstream 1.0kb downstream 2393 true AmTr_v1.0_scaffold00079: 610819-613211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00079: 610819-611818 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 2.0kb upstream 2.0kb upstream 3393 true AmTr_v1.0_scaffold00079: 611819-615211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00079: 613212-615211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 2.0kb downstream 2.0kb downstream 3393 true AmTr_v1.0_scaffold00079: 609819-613211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00079: 609819-611818 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 5.0kb upstream 5.0kb upstream 6393 true AmTr_v1.0_scaffold00079: 611819-618211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00079: 613212-618211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 5.0kb downstream 5.0kb downstream 6393 true AmTr_v1.0_scaffold00079: 606819-613211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00079: 606819-611818 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 10.0kb upstream 10.0kb upstream 11393 true AmTr_v1.0_scaffold00079: 611819-623211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00079: 613212-623211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 10.0kb downstream 10.0kb downstream 11393 true AmTr_v1.0_scaffold00079: 601819-613211 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.19 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00079: 601819-611818 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain