Gene : evm_27.TU.AmTr_v1.0_scaffold00079.51 A. trichopoda v1.0
Defline:  (1 of 2) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  50
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00079.51 Secondary Identifier:  ? PAC:31564444
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-6809 Amborella trichopoda pathologic  
Atrichopoda PWY-695 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00079.51 0.5kb upstream 0.5kb upstream 8623 true AmTr_v1.0_scaffold00079: 1726406-1735028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00079: 1726406-1726905 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 0.5kb downstream 0.5kb downstream 8623 true AmTr_v1.0_scaffold00079: 1726906-1735528 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00079: 1735029-1735528 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 1.0kb upstream 1.0kb upstream 9123 true AmTr_v1.0_scaffold00079: 1725906-1735028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00079: 1725906-1726905 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 1.0kb downstream 1.0kb downstream 9123 true AmTr_v1.0_scaffold00079: 1726906-1736028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00079: 1735029-1736028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 2.0kb upstream 2.0kb upstream 10123 true AmTr_v1.0_scaffold00079: 1724906-1735028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00079: 1724906-1726905 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 2.0kb downstream 2.0kb downstream 10123 true AmTr_v1.0_scaffold00079: 1726906-1737028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00079: 1735029-1737028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 5.0kb upstream 5.0kb upstream 13123 true AmTr_v1.0_scaffold00079: 1721906-1735028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00079: 1721906-1726905 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 5.0kb downstream 5.0kb downstream 13123 true AmTr_v1.0_scaffold00079: 1726906-1740028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00079: 1735029-1740028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 10.0kb upstream 10.0kb upstream 18123 true AmTr_v1.0_scaffold00079: 1716906-1735028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00079: 1716906-1726905 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 10.0kb downstream 10.0kb downstream 18123 true AmTr_v1.0_scaffold00079: 1726906-1745028 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00079.51 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00079: 1735029-1745028 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain