Gene : evm_27.TU.AmTr_v1.0_scaffold00078.157 A. trichopoda v1.0
Defline:  (1 of 1) PTHR11946:SF51 - LEUCINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  156
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00078.157 Secondary Identifier:  ? PAC:31555380
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda TRNA-CHARGING-PWY Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00078.157 0.5kb upstream 0.5kb upstream 3800 true AmTr_v1.0_scaffold00078: 2676893-2680692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00078: 2676893-2677392 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 0.5kb downstream 0.5kb downstream 3800 true AmTr_v1.0_scaffold00078: 2677393-2681192 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00078: 2680693-2681192 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 1.0kb upstream 1.0kb upstream 4300 true AmTr_v1.0_scaffold00078: 2676393-2680692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00078: 2676393-2677392 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 1.0kb downstream 1.0kb downstream 4300 true AmTr_v1.0_scaffold00078: 2677393-2681692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00078: 2680693-2681692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 2.0kb upstream 2.0kb upstream 5300 true AmTr_v1.0_scaffold00078: 2675393-2680692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00078: 2675393-2677392 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 2.0kb downstream 2.0kb downstream 5300 true AmTr_v1.0_scaffold00078: 2677393-2682692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00078: 2680693-2682692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 5.0kb upstream 5.0kb upstream 8300 true AmTr_v1.0_scaffold00078: 2672393-2680692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00078: 2672393-2677392 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 5.0kb downstream 5.0kb downstream 8300 true AmTr_v1.0_scaffold00078: 2677393-2685692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00078: 2680693-2685692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 10.0kb upstream 10.0kb upstream 13300 true AmTr_v1.0_scaffold00078: 2667393-2680692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00078: 2667393-2677392 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 10.0kb downstream 10.0kb downstream 13300 true AmTr_v1.0_scaffold00078: 2677393-2690692 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00078.157 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00078: 2680693-2690692 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain