Gene : evm_27.TU.AmTr_v1.0_scaffold00081.76 A. trichopoda v1.0
Defline:  (1 of 2) PTHR13301:SF33 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 1 [UDP-FORMING] Genomic Order:  76
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00081.76 Secondary Identifier:  ? PAC:31563850
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-1001 Amborella trichopoda pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00081.76 0.5kb upstream 0.5kb upstream 10359 true AmTr_v1.0_scaffold00081: 2761950-2772308 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00081: 2771809-2772308 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 0.5kb downstream 0.5kb downstream 10359 true AmTr_v1.0_scaffold00081: 2761450-2771808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00081: 2761450-2761949 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 1.0kb upstream 1.0kb upstream 10859 true AmTr_v1.0_scaffold00081: 2761950-2772808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00081: 2771809-2772808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 1.0kb downstream 1.0kb downstream 10859 true AmTr_v1.0_scaffold00081: 2760950-2771808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00081: 2760950-2761949 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 2.0kb upstream 2.0kb upstream 11859 true AmTr_v1.0_scaffold00081: 2761950-2773808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00081: 2771809-2773808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 2.0kb downstream 2.0kb downstream 11859 true AmTr_v1.0_scaffold00081: 2759950-2771808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00081: 2759950-2761949 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 5.0kb upstream 5.0kb upstream 14859 true AmTr_v1.0_scaffold00081: 2761950-2776808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00081: 2771809-2776808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 5.0kb downstream 5.0kb downstream 14859 true AmTr_v1.0_scaffold00081: 2756950-2771808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00081: 2756950-2761949 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 10.0kb upstream 10.0kb upstream 19859 true AmTr_v1.0_scaffold00081: 2761950-2781808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00081: 2771809-2781808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 10.0kb downstream 10.0kb downstream 19859 true AmTr_v1.0_scaffold00081: 2751950-2771808 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00081.76 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00081: 2751950-2761949 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain